PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9511_iso_6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 1102aa    MW: 123308 Da    PI: 9.0887
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9511_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.6e-092154338
                                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
                      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                                          W++eE  ++++a +++G++ Wk++a+ +  +R+  
  cra_locus_9511_iso_6_len_3628_ver_3 21 QWSKEELTRFYEAYRKYGKD-WKKVASAVR-NRSVD 54
                                         6*****************99.*********.99975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.6961770IPR017884SANT domain
SuperFamilySSF466892.09E-101865IPR009057Homeodomain-like
SMARTSM007172.2E-41866IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-52154IPR009057Homeodomain-like
PfamPF002497.9E-82156IPR001005SANT/Myb domain
CDDcd001671.19E-52256No hitNo description
SMARTSM011351.7E-54609710IPR033471DIRP domain
PfamPF065849.9E-33609709IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1102 aa     Download sequence    Send to blast
XLSLSLSLLQ KRKLSDMLGP QWSKEELTRF YEAYRKYGKD WKKVASAVRN RSVDMVEALY  60
TMNRAYLSLP EGTASVVGLN AMMTDHYSNL AGSDSEQESN DGAGTSRKPQ KRARGRVQPG  120
NSKASDVQIT SPMVPSGYVG LQLMKKKRTG GSGPRAVGKR TPRFPVSYSY ENIKGEKFFS  180
PTRQGLRMKT DTNDDDVAHE IALALTEASQ RGSSPQASQT PILRSESVMS SPARNAELKR  240
AGLKSVNARN VESDVDDEDL EGSMEADTGD LSRHGPFVKP RVGTMVNKGR RIDRRKLDVD  300
DSSDNHLDDI KEACSGTEEG QGLGASRGKL KIDAKISRSS PQGSRKKSKK VLFSRDEAPA  360
FDALQTLADL SLMMPAEGNE DESMVQIKEE NDDHVDESGS LETMPTDNQR DRRKSSGVRV  420
KVDRSSSRLG VALSKAPKPG KVSTVDDKDL SDMKQEVYQS KSVRKKQKIR KSEAHLDSHV  480
SESQEAEARD IGKMSKNKRS QSASPKLIKN AEHSSSTDPR REGSDSTQST VQVPPAKEIS  540
LPTSVRSRRK RNLKKPNIQK DLKFPDKVFN ERSCNPASSL HDTASILKEK LSNCLSNHRL  600
RRWCTYEWFY SAIDYPWFAK REFVEYLYHV GLGHVPRLTR VEWGVIRSSL GKPRRFSQQF  660
LKEEKKKLNQ YRDSVRKHYN DLREGTQEGL PTDLARPLSV GQRVIAIHPK TREIHDGNVL  720
TVDHARCRVQ FDRPELGVEF VMDIDCMPLN PLENIPTLLA RHIALDRFFE NFNELRTVER  780
AKASPGGEVD NFNGLSHSSP STYPVTNLLK QTKVAPEDTN MQARIVPTET SPYQQIPYPQ  840
PCTSAQIQAK EADIQAVAEL TRALDKKEAV VFELKRMNDD VVDDCSLKES EPFKKQYAAV  900
LVQLQEANEQ VSSSLFRLRQ RNTYRGTISL SWPRPIANVG DHLNSLERST CQPHESGTHA  960
NEIIEGSRAK ARTMVDIAMQ AMSSVKCREN TFEKIEEAID YVNEQLPLDD SCIPPVADPK  1020
SKCASDKNEA QIPAELITQC VATLLMIQKC TERQFPPADV AQILDSAVTS LKPCCSQNLS  1080
MYAEIQKCMG MIKNQILALI PT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1463469RKKQKIR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342756.10.0PREDICTED: protein ALWAYS EARLY 3-like
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLA0A068UX250.0A0A068UX25_COFCA; Uncharacterized protein
STRINGSolyc01g067560.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33122333